Important and interesting links
Academic
Blog on various tricks in using scientific softwares: link
GROMACS tutorials: link
PLUMED tutorials: link
LAMMPS tutorials: link
OpenMM: link
MARTINI tutorials: link
AutoDock Vina tutorial: link
Packmol (Initial configurations for Molecular Dynamics Simulations by packing optimization): link
PMX: Generate hybrid structures/topologies for amino acid mutations: link
MDAnalysis: Python module for post processing MD trajectories: link
CHARMM-GUI: Interactively build complex systems and topologies: link
DoSPT: 2PT entropy of liquids: link
3D-2PT: Spatially resolved entropy of liquids: link
GenIce2: Tool to generate ice and clathrate structures: link
Water models for MD simulation: link
All you need to know about water: linkÂ
Melting point (Ice Ih) of water models: link
Build polypeptides with custom amino acid sequence in PyMol: link
Obtain data points from figure (WebPlotDigitizer): link
Generate tables for latex, html etc.: link
Energy unit conversions: link
LLPS Databases: link
Add missing atoms in pdb file (tutorial): link